As the leaves begin to crunch underfoot and the air grows crisp, I find myself craving cozy and comforting dishes that embrace the essence of fall. Enter my Butternut Squash Casserole, a heartwarming blend of roasted butternut squash, sweet apples, and a touch of caramelized fennel that just sings autumn. Not only is this casserole an easy make-ahead option for those busy weeknights, but it’s also a delightful crowd-pleaser for holiday gatherings—ideal for both vegetarians and meat-lovers alike! Topped with gooey Gruyere cheese, it creates a delightful harmony of textures and flavors that will have everyone reaching for seconds. Curious how it all comes together? Let’s dive into this scrumptious recipe!

Why is Butternut Squash Casserole a must-try?
Crowd-Pleasing Comfort: This dish is perfect for gatherings, impressing both friends and family with its rich, warm flavors.
Easy Preparation: With clear instructions and simple ingredients, you’ll be whipping this up in no time, whether you’re a novice or a seasoned chef.
Versatile Ingredients: Customize it with sausage for a heartier option or keep it vegetarian for a healthier twist!
Seasonal Delight: Using fresh fall ingredients, the sweet and savory balance makes this dish uniquely autumnal.
Leftover Heaven: It’s just as delicious the next day, making it ideal for meal prep or quick lunches post-holiday feast.
For further fall inspiration, check out my Apple Crisp Casserole or the delicious Cheesy Low Carb Chicken Casserole for a delightful meal option.
Butternut Squash Casserole Ingredients
For the Casserole
• Butternut Squash – the star of the dish, bringing natural sweetness and creaminess; fresh is best!
• Apples – for a burst of sweetness; choose firm varieties like Honeycrisp or pears as a substitute.
• Sweet Italian Sausage – adds savory depth; easily omit for a vegetarian-friendly casserole.
• Fennel – caramelized to enhance sweetness; substitute with extra onions if preferred.
• Onion – enriches the flavors; yellow or sweet onions bring the best results.
• Gruyere Cheese – for a gooey, rich finish; a sharper cheese can work for those who prefer a bolder flavor.
• Pure Maple Syrup – balances the dish with sweetness; honey is a suitable alternative.
• Olive Oil – aids in roasting and adds flavor.
• Salt and Pepper – essential for bringing all the flavors together.
Optional Toppings
• Fresh Herbs (Thyme or Sage) – for an aromatic boost; add these for extra flavor complexity.
• Nuts (Pecans or Walnuts) – sprinkle on top for a delightful crunch and nutty flavor if desired.
This Butternut Squash Casserole is the epitome of fall comfort food, sure to delight everyone at the table!
Step‑by‑Step Instructions for Butternut Squash Casserole
Step 1: Prep the Ingredients
Start by peeling and cubing the butternut squash into bite-sized pieces. Next, slice the apples—firm varieties like Honeycrisp work wonderfully. Also, thinly slice the fennel and onion. This preparation can be done a few hours in advance, just be sure to toss the apples in a bit of lemon juice to prevent browning as you prepare for your cozy Butternut Squash Casserole.
Step 2: Roast the Vegetables
Preheat your oven to 400°F (200°C). In a large mixing bowl, toss the cubed butternut squash and sliced apples with a drizzle of maple syrup and olive oil until well coated. Spread the mixture onto a baking sheet lined with parchment paper, ensuring even spacing. Roast for 25-30 minutes, stirring halfway through, until the squash is fork-tender and lightly caramelized, filling your kitchen with a sweet aroma.
Step 3: Caramelize Fennel and Onion
While the squash roasts, heat a tablespoon of olive oil in a large skillet over medium heat. Add the sliced fennel and onions, cooking them slowly for about 10-15 minutes. Stir occasionally until they caramelize to a lovely golden-brown color and develop a sweet, fragrant aroma. This step adds a rich depth to your Butternut Squash Casserole.
Step 4: Combine Ingredients
Once the roasted vegetables have cooled slightly, transfer the butternut squash and apples into a greased baking dish. Layer on the caramelized fennel and onions, and if using, add the cooked Italian sausage for added protein. Gently mix the layers together to distribute the flavors evenly—this mix will be the hearty base for your creamy casserole.
Step 5: Add Cheese
Now, it’s time to top off your comforting Butternut Squash Casserole! Generously sprinkle shredded Gruyere cheese over the entire mixture. The cheese will melt into the layers, creating a gooey, rich finish that ties all the flavors together beautifully. Feel free to add more cheese if you like a cheesier bite!
Step 6: Bake
Preheat your oven to 350°F (175°C) if you haven’t already. Place the casserole in the oven and bake for 25-30 minutes, or until the cheese is bubbly and lightly golden. You want it to be heated through and perfectly melted—this enticing sight will have everyone eager to dig into your delicious Butternut Squash Casserole!

Expert Tips for Butternut Squash Casserole
- Pick Fresh Ingredients: Use fresh butternut squash and apples for the best flavor. Frozen squash can become mushy and lose its texture in the casserole.
- Don’t Rush Roasting: Ensure to roast the squash and apples until just tender. Over-roasting can lead to mushiness, compromising the final dish’s integrity.
- Layer Wisely: When combining the ingredients, mix the layers gently but thoroughly to ensure even distribution of flavors throughout your Butternut Squash Casserole.
- Cheese Variations: While Gruyere adds richness, feel free to experiment with sharper cheeses for a bolder flavor. Just remember, select a cheese that melts nicely!
- Make Ahead: Assemble the casserole ahead of time without cheese, cover, and refrigerate. Add cheese just before baking—this helps in flavor melding and saves time on busy days.
What to Serve with Cozy Butternut Squash Casserole
Pair your dish with a delightful assortment that complements fall flavors and enhances the meal experience.
- Crispy Green Salad: A fresh, crunchy salad with mixed greens and a tangy vinaigrette balances the casserole’s richness, adding a light contrast.
- Roasted Brussels Sprouts: These nutty, caramelized bites provide an earthy flavor that pairs beautifully with the sweetness of the butternut squash.
- Garlic Breadsticks: Serve warm, buttery breadsticks to scoop up the casserole; their soft, chewy texture brings joy to every mouthful.
- Caramelized Apples: For a sweet dessert touch, serve sautéed apples with a sprinkle of cinnamon to echo the warmth of the dish.
- Mulled Cider: This warm, spiced drink elevates your gathering, offering comforting notes that meld seamlessly with the autumn ambiance.
- Quinoa Pilaf: Fluffy quinoa mixed with herbs and cranberries adds a wholesome side filled with protein while enhancing the meal’s nourishing appeal.
Imagine a cozy dinner table surrounded by laughter, where your Butternut Squash Casserole steals the show, accompanied by these delightful pairings!
Butternut Squash Casserole Variations
Feel free to get creative with this comforting casserole and make it your own!
-
Gluten-Free: Use gluten-free breadcrumbs or cornmeal on top for added crunch without any gluten.
-
Dairy-Free: Substitute Gruyere cheese with a dairy-free cheese alternative, or use nutritional yeast for a cheesy flavor.
-
Protein Boost: Add cooked lentils or chickpeas for a hearty vegetarian protein punch that works beautifully with the spices.
-
Herbed Delight: Stir in fresh herbs like rosemary or sage for an aromatic twist that elevates the seasonal essence of your casserole.
-
Nutty Crunch: Top with toasted pecans or walnuts before baking to add a delightful crunch that contrasts with the creamy squash.
-
Heat Level: Add a sprinkle of red pepper flakes or diced jalapeños for a warm kick that brings an exciting depth of flavor.
-
Veggie Medley: Incorporate chopped spinach, kale, or even carrots for more colorful veggies—just make sure to sauté them first to remove excess moisture.
Consider trying these variations next time you prepare this dish or as you enjoy it alongside a French Toast Casserole for an amazing brunch spread. Happy cooking!
Make Ahead Options
These Butternut Squash Casserole options are perfect for busy home cooks looking to save time during the week! You can chop the butternut squash, apples, fennel, and onion up to 24 hours in advance. Just remember to toss the apples in a little lemon juice to prevent browning. Additionally, you can combine and layer the roasted vegetables with the sausage (if using) a day ahead. Simply cover the assembled casserole tightly with foil and refrigerate. When you’re ready to bake, remove from the fridge, sprinkle with Gruyere cheese, and pop it in the oven for 25-30 minutes, achieving that delicious, comforting flavor with minimal effort!
How to Store and Freeze Butternut Squash Casserole
Fridge: Store any leftovers in an airtight container in the fridge for up to 3 days. When ready to enjoy, reheat in the oven at 350°F until warmed through.
Freezer: While it’s best to avoid freezing the casserole for optimal texture, if necessary, it can be frozen for up to 2 months without the cheese. Thaw overnight in the fridge and bake at 350°F, adding cheese before heating.
Reheating: To reheat refrigerated casserole, cover with aluminum foil and warm in a 350°F oven for 20-25 minutes or until heated thoroughly and cheese is melty again.
Make Ahead: You can assemble the Butternut Squash Casserole a day in advance, refrigerate, and bake just before serving for a hassle-free meal.

Butternut Squash Casserole Recipe FAQs
How do I select the best butternut squash for my casserole?
Absolutely! Look for a butternut squash that feels heavy for its size, with a smooth, even skin. Avoid any that have dark spots or blemishes, as these can indicate spoilage. The color should be a consistent tan, and the stem should be dry; a fresh stem might mean it’s picked too young.
Can I prepare the casserole ahead of time?
Very! You have the option to prep your Butternut Squash Casserole up to a day in advance. Simply assemble the casserole without adding cheese, cover it tightly, and store it in the refrigerator. When you’re ready, add the cheese on top before baking it at 350°F for about 25-30 minutes, allowing it to heat through and the cheese to melt.
How should I store leftovers of the casserole?
Store any leftovers in an airtight container in the refrigerator for up to 3 days. When you’re ready to enjoy them, simply reheat in an oven set to 350°F, covered with aluminum foil to keep the moisture in, for about 20-25 minutes or until warmed through.
Can I freeze Butternut Squash Casserole?
While I recommend avoiding freezing for the best texture, you can freeze it without cheese for up to 2 months if necessary. To do this, prepare the casserole as usual, but leave off the cheese. Wrap it tightly in plastic wrap and aluminum foil to prevent freezer burn. When ready, thaw it overnight in the fridge, and then reheat in a 350°F oven, adding cheese on top before baking until bubbling.
What if my casserole comes out too mushy?
This can happen, especially if the squash or apples are over-roasted. To prevent this next time, ensure your vegetables are roasted just until they are tender but not falling apart. Also, I recommend using fresh vegetables rather than frozen to maintain their texture.
Is this casserole suitable for vegetarians or those with allergies?
Yes! This Butternut Squash Casserole can easily be made vegetarian by omitting the Italian sausage. If you have specific allergies, always check your cheese and ingredients to ensure they meet your dietary needs. Gruyere is a good cheese for flavor but can be swapped with a dairy-free option if necessary. Be mindful of any nut allergies if you decide to add optional toppings like pecans or walnuts.

Delicious Butternut Squash Casserole for Cozy Fall Nights
Ingredients
Equipment
Method
- Prep the Ingredients: Peel and cube the butternut squash, slice the apples, and thinly slice the fennel and onion, tossing apples in lemon juice to prevent browning.
- Roast the Vegetables: Preheat oven to 400°F. Toss butternut squash and apples with maple syrup and olive oil, spread on baking sheet and roast for 25-30 minutes.
- Caramelize Fennel and Onion: In skillet, heat olive oil, add fennel and onions, cooking for 10-15 minutes until golden-brown.
- Combine Ingredients: Transfer roasted squash and apples to baking dish, layer with caramelized fennel and onion, and mix gently.
- Add Cheese: Sprinkle shredded Gruyere cheese over the mixture.
- Bake: Preheat oven to 350°F. Bake casserole for 25-30 minutes until cheese is bubbly and lightly golden.
