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As the leaves start to turn and the air gets crisp, there’s nothing quite like embracing the cozy flavors of fall. Enter my Keto Pumpkin Cheesecake Muffins, a delightful twist on a seasonal favorite that checks all the boxes for those of us navigating a low-carb lifestyle. Each muffin is a warm hug, featuring a creamy cheesecake center wrapped in a moist pumpkin base, all topped with a crumbly streusel that adds just the right crunch. Not only are these muffins incredibly satisfying as a guilt-free breakfast option, but they also make for a perfect afternoon snack. So, whether you’re hosting a gathering or simply indulging at home, these muffins promise to be a hit! Are you ready to bake up some autumn magic?

Why Are These Muffins So Irresistible?

Flavor Explosion: Each bite of these Keto Pumpkin Cheesecake Muffins captures the essence of fall, combining warm spices and rich cream cheese for an unforgettable taste.

Easy to Make: No need for complicated techniques here; these muffins come together quickly with minimal fuss, perfect for busy mornings.

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Health-Conscious: They cater to various dietary needs—gluten-free, low-carb, and sugar-free, ensuring everyone can indulge without guilt.

Versatile Treat: Whether you enjoy them warm for breakfast or as a cozy afternoon snack, these muffins easily adapt to any occasion.

Impressive Presentation: The beautiful streusel top doesn’t just taste great; it looks delightful, making them a perfect treat to share at gatherings. For more seasonal delights, check out my Strawberry Cheesecake Dump or Carrot Cake Cheesecake recipes!

Keto Pumpkin Cheesecake Muffin Ingredients

Ready to whip up these delightful treats? Here’s what you’ll need!

For the Muffin Batter

  • Almond Flour – Provides structure; it’s gluten-free and low in carbs, making it suitable for keto.
  • Coconut Flour – Absorbs moisture and adds a hint of sweetness; substitute with additional almond flour if not available.
  • Baking Powder – Helps muffins rise; ensure it’s fresh for maximum leavening.
  • Cinnamon Powder – Adds warm, spicy flavor; can increase for more spice.
  • Pumpkin Spice – Complements the pumpkin; store-bought blends work well.
  • Psyllium Husk Powder – Improves texture by providing fiber; can be omitted if unavailable, but the texture may vary.
  • Salt – Enhances flavor; use sea salt for best results.
  • Ground Ginger – Adds warmth; optional for those who prefer less spice.
  • Unsalted Butter – Provides richness and moisture; always use softened for easier mixing.
  • Granulated Sugar Substitute – Sweetens without carbs; options include Lakanto or Swerve.
  • Eggs – Binds ingredients together and adds moisture; use room temperature for better incorporation.
  • Vanilla Extract – Enhances flavor profile; pure extract recommended.
  • Pure Pumpkin Puree – The star ingredient that brings moisture and pumpkin flavor; ensure it’s unsweetened.

For the Cheesecake Filling

  • Cream Cheese – Creates the cheesecake filling; must be softened for easy blending.
  • Confectioner’s Sugar Substitute – Sweetens the cream cheese filling; ensure it’s powdered for smooth texture.

For the Streusel Topping

  • Almond Flour – Adds texture and crunch; use finely ground for the best consistency.
  • Coconut Flour – Balances the moistness and adds a lovely sweetness; skip if you need a nut-free version.
  • Granulated Sugar Substitute – To sweeten the topping while keeping it low-carb; choose your favorite brand.
  • Salt – Enhances the flavor; a pinch can make a big difference.
  • Cinnamon Powder – The spice gives warmth to the crumble; feel free to add more for extra flavor.
  • Unsalted Butter – Tangy and rich for a perfectly crumbly topping; make sure it’s cold for the best texture.

Step‑by‑Step Instructions for Keto Pumpkin Cheesecake Muffins

Step 1: Prepare the Cheesecake Filling
In a mixing bowl, combine the softened cream cheese, confectioner’s sugar substitute, and vanilla extract. Beat these ingredients together until creamy and smooth. Then, form the mixture into a log shape and wrap it in plastic wrap. Place it in the freezer for 1.5 hours to firm up, ensuring the cheesecake filling will hold its shape during baking.

Step 2: Preheat the Oven
Preheat your oven to 350°F (175°C). While the oven is warming up, this step ensures a consistent baking temperature for your Keto Pumpkin Cheesecake Muffins. A preheated oven helps create a perfectly risen muffin with a fluffy texture, so don’t skip this crucial part!

Step 3: Prepare Muffin Tins
Line two muffin pans with a total of 24 paper liners. This not only makes for an easy clean-up but also helps to keep the muffins intact as you serve them. Make sure the liners are securely in place, ready to hold the delicious batter and cheesecake filling as you assemble your muffins.

Step 4: Make the Muffin Batter
In a large mixing bowl, beat the softened unsalted butter with the granulated sugar substitute until creamy and well combined. Add room-temperature eggs one at a time, mixing thoroughly after each addition. Then, gently fold in the pure pumpkin puree along with the almond flour, coconut flour, baking powder, and warm spices. Be careful not to overmix; you want your batter to remain light.

Step 5: Prepare the Streusel Topping
In a separate bowl, mix together almond flour, coconut flour, the sugar substitute, salt, and cinnamon for the streusel topping. Add cold, cubed unsalted butter and use a pastry cutter or your fingers to combine it until the mixture resembles coarse crumbs. Set aside; this will add a delightful crunch to your muffins.

Step 6: Assemble the Muffins
Begin layering the muffin liners at the bottom with a scoop of the pumpkin muffin batter, about halfway full. Carefully slice the frozen cheesecake filling into thick pieces and place one in the center of each muffin cup. Top with another layer of the muffin batter, covering the cheesecake, and finish with a generous sprinkle of the streusel topping.

Step 7: Bake the Muffins
Place the muffin pans in the preheated oven and bake for 20 to 25 minutes. To check for doneness, insert a toothpick into the center of a muffin; it should come out clean or with a few moist crumbs. As the muffins bake, a delicious aroma of pumpkin and spices will fill your kitchen.

Step 8: Cool and Serve
Once baked, remove the muffin pans from the oven and allow them to cool in the pans for about 10 minutes. Then, transfer the Keto Pumpkin Cheesecake Muffins to a wire rack to cool completely. This step is essential for allowing the flavors to develop and ensuring the muffins are fluffy and enjoyable to eat!

Keto Pumpkin Cheesecake Muffins Variations

Feel free to get creative and personalize your Keto Pumpkin Cheesecake Muffins with these fun variations!

  • Nut-Free: Substitute almond flour with sunflower seed flour to keep it low-carb and allergy-friendly.
  • Chocolate Lovers: Stir in sugar-free chocolate chips into the muffin batter for a delightful chocolatey surprise.
  • Spicy Kick: Add a pinch of cayenne pepper or some chopped jalapeños to the batter for a spicy twist.
  • Dairy-Free: Use coconut cream in place of cream cheese for the filling and coconut oil instead of butter for a vegan option.
  • Maple Flavor: Replace the sugar substitute in the batter with sugar-free maple syrup for a delicious maple-infused muffin.
  • Fruit Infusion: Add unsweetened applesauce for extra moisture and a hint of fruity sweetness; just reduce the pumpkin puree slightly.
  • Extra Crunch: Toss in some chopped pecans or walnuts into the topping for an added crunch that perfectly complements the muffins.
  • Pumpkin Spice Variation: Boost the autumn flavor by increasing the pumpkin pie spice in the batter or using a blend of chai spices for a unique twist.

Feel inspired? Each choice offers a unique take to suit any occasion or taste preference. You might also enjoy trying a comforting bowl of Joumou Haitian Pumpkin Soup or a luscious Strawberry Cheesecake to make your fall menu even more delightful!

How to Store and Freeze Keto Pumpkin Cheesecake Muffins

Fridge: Store your Keto Pumpkin Cheesecake Muffins in an airtight container in the refrigerator for up to 5 days to maintain freshness and flavor.

Freezer: For longer storage, freeze the muffins individually wrapped or in a freezer-safe bag for up to 3 weeks. This keeps them tasty and ready for a quick treat!

Reheating: To enjoy, gently reheat the muffins in the oven at 350°F (175°C) for about 10 minutes or microwave for 20-30 seconds until warmed through, retaining their delightful texture.

Thawing: When ready to enjoy frozen muffins, thaw them in the refrigerator overnight for the best results before reheating.

Expert Tips for Perfect Keto Pumpkin Cheesecake Muffins

  • Frozen Filling Required: Ensure the cream cheese filling is adequately frozen to hold its shape during baking, preventing any melting into the muffin batter.

  • Avoid Overmixing: Mix the muffin batter gently; overmixing can lead to dense Keto Pumpkin Cheesecake Muffins. Aim for a light, fluffy texture for the best results.

  • Cool Before Serving: For enhanced flavor and texture, let the muffins cool completely on a wire rack. This waiting period allows the ingredients to meld beautifully.

  • Storage Tips: Keep leftover muffins in an airtight container in the refrigerator for up to 5 days or freeze for longer freshness. Reheat before enjoying!

  • Customize Your Spice: Feel free to adjust the spices according to your preferences; increasing the cinnamon and pumpkin spice can elevate the cozy fall flavors in your muffins.

What to Serve with Keto Pumpkin Cheesecake Muffins

As the aroma of these delightful muffins fills your kitchen, consider pairing them with these delicious accompaniments for a well-rounded treat.

  • Creamy Greek Yogurt: A dollop adds a refreshing tang and creamy texture that balances the sweet, spiced muffins perfectly. Slightly sweetened or flavored yogurts can elevate your breakfast experience.

  • Fresh Berries: A side of juicy, vibrant berries like raspberries or blueberries brings a burst of freshness and a pop of color. Their tartness complements the sweetness in each muffin.

  • Nutty Granola: A handful of crunchy, low-carb granola adds texture and an extra layer of flavor. Enjoy it alongside your muffin for a satisfying morning that feels indulgent yet healthy.

  • Cup of Herbal Tea: Sip on soothing herbal tea, like chamomile or peppermint. The warm, fragrant notes pair beautifully with the spices in the muffins while providing a calming moment.

  • Savory Scrambled Eggs: Serve with fluffy scrambled eggs for a wholesome breakfast that’ll keep you energized throughout the day. The richness of the eggs complements the sweetness splendidly.

  • Chilled Almond Milk: A glass of creamy almond milk enhances the flavors of your muffins and keeps your low-carb diet intact. It’s a refreshing option, especially when served cold!

  • Pumpkin Spice Latte: For the ultimate fall vibe, enjoy your muffins with a cozy pumpkin spice latte. The warmth and spices create a perfect match for your Keto Pumpkin Cheesecake Muffins.

  • Sugar-Free Whipped Cream: Top your muffins with a dollop of homemade sugar-free whipped cream to bring a touch of luscious sweetness and a creamy texture that enhances each bite.

Embrace these pairings for a delightful autumn-inspired meal that will delight your family and friends!

Make Ahead Options

These Keto Pumpkin Cheesecake Muffins are a fantastic choice for meal prep enthusiasts looking to save time during busy mornings! You can prepare the cheesecake filling up to 24 hours in advance by mixing the softened cream cheese, confectioner’s sugar substitute, and vanilla extract, then forming it into a log and freezing it. Additionally, you can mix the dry ingredients (flours, baking powder, and spices) for the muffin batter up to 3 days ahead to streamline the process. When you’re ready to bake, simply combine the prepped ingredients with the wet ones and assemble the muffins as directed. By freezing the filling and prepping your dry mix, you’ll ensure your muffins are just as delicious with minimal effort when it’s time to enjoy them!

Keto Pumpkin Cheesecake Muffins Recipe FAQs

How do I choose the right pumpkin puree?
Absolutely! When selecting pumpkin puree, look for cans that list 100% pure pumpkin with no added sugars or spices. Check for a smooth texture and a deep orange color; avoid those with dark spots or liquid separation, which indicate lower quality.

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How should I store these muffins?
Store your Keto Pumpkin Cheesecake Muffins in an airtight container in the refrigerator for up to 5 days. This keeps them fresh and delicious, ready for a cozy breakfast or snack whenever you need!

Can I freeze these muffins?
Very! To freeze, wrap each muffin individually in plastic wrap or foil and place them in a freezer-safe bag or container. They will last for up to 3 weeks. When you’re ready to enjoy, simply thaw them in the fridge overnight and reheat before serving.

What if my muffins come out dense?
If your muffins are dense, it may be due to overmixing the batter. The key is to mix just until the ingredients are combined. Also, make sure your baking powder is fresh; old baking powder can hinder the rise, leading to a heavier texture.

Are these muffins safe for my pets?
No, you should avoid giving these muffins to pets, particularly due to the sweeteners used. Many sugar substitutes like xylitol are toxic to dogs and can cause health issues. Always check ingredients before sharing with furry friends!

Can I substitute ingredients if I have allergies or restrictions?
Certainly! If you have a nut allergy, you can replace almond flour with sunflower seed flour. For a dairy-free option, use vegan cream cheese and buttery spreads that fit your diet. Just keep in mind that substitutions may slightly alter the taste and texture!

Keto Pumpkin Cheesecake Muffins

Keto Pumpkin Cheesecake Muffins for Cozy Fall Mornings

Enjoy Keto Pumpkin Cheesecake Muffins, a low-carb delight that captures fall flavors with creamy cheesecake and moist pumpkin.
Prep Time 30 minutes
Cook Time 25 minutes
Freezing Time 1 hour 30 minutes
Total Time 2 hours 25 minutes
Servings: 24 muffins
Course: Dessert
Cuisine: American
Calories: 150

Ingredients
  

For the Muffin Batter
  • 2 cups Almond Flour Provides structure; gluten-free and low in carbs
  • 1/2 cup Coconut Flour Absorbs moisture and adds sweetness
  • 1 tbsp Baking Powder Ensure it's fresh for maximum leavening
  • 1 tbsp Cinnamon Powder Adds warm flavor
  • 2 tbsp Pumpkin Spice Store-bought blends work well
  • 1 tbsp Psyllium Husk Powder Improves texture by providing fiber
  • 1/2 tsp Salt Enhances flavor; use sea salt
  • 1 tsp Ground Ginger Optional for less spice
  • 1/4 cup Unsalted Butter Use softened for easier mixing
  • 1 cup Granulated Sugar Substitute Options include Lakanto or Swerve
  • 3 large Eggs Use room temperature for better incorporation
  • 1 tsp Vanilla Extract Pure extract recommended
  • 1 cup Pure Pumpkin Puree Unsweetened is preferred
For the Cheesecake Filling
  • 8 oz Cream Cheese Must be softened for easy blending
  • 1/2 cup Confectioner's Sugar Substitute Ensure it’s powdered for smooth texture
For the Streusel Topping
  • 1 cup Almond Flour Finely ground for best consistency
  • 1/4 cup Coconut Flour Skip if nut-free
  • 1/4 cup Granulated Sugar Substitute To keep it low-carb
  • 1/4 tsp Salt A pinch enhances flavor
  • 1 tsp Cinnamon Powder Feel free to add more for flavor
  • 1/4 cup Unsalted Butter Cold for the best texture

Equipment

  • Mixing Bowl
  • Muffin Pans
  • Electric mixer
  • pastry cutter
  • Plastic Wrap

Method
 

Step-by-Step Instructions for Keto Pumpkin Cheesecake Muffins
  1. In a mixing bowl, combine the softened cream cheese, confectioner's sugar substitute, and vanilla extract. Beat these ingredients together until creamy and smooth. Then, form the mixture into a log shape and wrap it in plastic wrap. Place it in the freezer for 1.5 hours to firm up.
  2. Preheat your oven to 350°F (175°C).
  3. Line two muffin pans with a total of 24 paper liners.
  4. In a large mixing bowl, beat the softened unsalted butter with the granulated sugar substitute until creamy. Add eggs one at a time, mixing thoroughly. Then, gently fold in the pure pumpkin puree and the dry ingredients.
  5. In a separate bowl, mix the streusel ingredients. Add cold, cubed unsalted butter and combine until it resembles coarse crumbs.
  6. Layer the muffin liners with a scoop of the pumpkin batter, add the cheesecake filling, cover with more batter, and finish with streusel topping.
  7. Bake for 20 to 25 minutes until a toothpick comes out clean or with a few moist crumbs.
  8. Let the muffins cool in the pans for 10 minutes before transferring them to a wire rack.

Nutrition

Serving: 1muffinCalories: 150kcalCarbohydrates: 5gProtein: 3gFat: 14gSaturated Fat: 5gCholesterol: 40mgSodium: 150mgPotassium: 100mgFiber: 3gSugar: 1gVitamin A: 400IUVitamin C: 1mgCalcium: 30mgIron: 1mg

Notes

Ensure the cream cheese filling is adequately frozen to hold its shape during baking. Mix gently to avoid dense muffins. Cool completely for enhanced flavor.

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